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So we first used SAMtools [ 62] to convert the.sam files of different libraries belonging to the same individual to.bam files and sort and merge them, followed by removal of potential PCR duplicates using Picard (http://broadinstitute.github.io/picard/).github.io/picard/
The 10x scaffolds belonging to the same primary linkage group were sorted in order of increasing genetic distance of their aligned ordered markers.
Transf., in gen., belonging to the same host or multitude.
Regions belonging to the same continent were depicted with the same color.
Strains belonging to the same outbreak had identical MLVA profiles.
Preys belonging to the same group encoded the same protein.
In most cases, isolates belonging to the same MLVA cluster belonged to the same PFGE type.
These cassettes include holins belonging to the same TC−1.E.20 family.
Many of these are strains belonging to the same species.
Genes belonging to the same bicluster have close biological functions.
This was in all cases justified because both species (experimental and substitute) belonged to the same clade within which mitochondrial DNA haplotype sorting is highly incomplete (i.e. the radiation of Lake Victoria and a clade of the Lake Malawi Mbuna).
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