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Modified adaptor and scaffold proteins can reroute signal traffic and adjust the response behavior of the pathway circuit.
The models are either linear and represent the stoichiometry and flux distribution in pathways or they are non-linear and account for the full kinetic behavior of the pathway, which is often significantly effected by regulatory signals.
This work indicates that the key quantity that determines the qualitative behavior of the pathway is the ratio of the constitutive to the ligand-induced rate of receptor degradation (CIR, constitutive-to-induced degradation ratio).
Furthermore, while mitochondrial deficiencies are often treated with metabolites to stimulate the enzyme activities, models will allow evaluation of the influences of metabolite treatments at the mitochondrial level, visualization of the dynamic behavior of the pathway and exploration of a hypothetical rationale of the treatment.
In some cases, the behavior of SPIA is closer to the GSEA, probably because both methods return a global pathway score (despite the fact that SPIA weights take into account the pathway structure, thus providing a more accurate description of the whole behavior of the pathway).
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In most situations, a change in one single nucleotide can affect the whole mechanism of a gene and consequently corrupt the behavior of the pathways involved, which could cause a disorder [ 10].
In order to investigate the behavior of the pathways, a dimension reduction procedure can be used that transforms expression values of all genes in a given module into one representative value for each sample.
Because of the high impact of PIAS2 on the dynamic behavior of this pathway, the knockout of this gene in ESCs may facilitate differentiation of ESCs, while increased PIAS2 production may enhance the self-renewal of ESCs or benefit induction of a differentiated cell to the pluripotent state.
We suggest an abstract model concentrating on interfaces between the modules, which reproduces important behaviors of the pathway.
The expression of Jak-Stat pathway members decreased as well in small colonies, an observation which is to be expected by the auto-regulatory behavior of this pathway as revealed previously in non-patterned cultures[18].
The observed bistability in expression of FLO11 can be directly related to the bistable behavior of the TOR pathway.
More suggestions(17)
behavior of the sequence
behavior of the road
behavior of the roadway
behavior of the approach
role of the pathway
conduct of the pathway
performance of the pathway
pattern of the pathway
behaviours of the pathway
behavior of the equilibrium
behavior of the plate
behavior of the government
behavior of the trend
behavior of the inequality
behavior of the entity
behavior of the material
behavior of the network
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