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Hypothesis B assumes that rps19 is duplicated or converted before the duplication of trnH via a DSB event that occurs at IRA.
In contrast, regulatory protein duplications occurred before the duplication of catalytic subunits (in Gnathostomata and Metazoa, respectively).
However, the results from the DNA phylogenies suggest the lamprey sequences could have diverged before the duplication of UCP2/3.
Thus, paired F3'5'Hs at the forefront of blocks 1 and 2 originated from an ectopic duplication before the duplication of the corresponding segment.
This suggested that CenH3 evolved independently to other H3 variants; the deletion event happened before the duplication of H3-like variants in Capsella rubella.
Notably, some species of the Eurotiomycetes, a lineage of the Pezizomycotina including the genus Aspergillus, only possess one Sso, suggesting that their lineage split before the duplication of secretory syntaxins [ 82].
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To assess if acceleration of DA blocks happened before or after the duplication of peptides on the hominin lineage, we compared LRT statistics from polarized blocks near parent and daughter peptides.
The phylogenetic tree indicates that ABCD1 originated from the duplication of ABCD2 before the divergence of lamprey with gnathostome and then underwent an independent gene loss in the lamprey lineage.
The DTSsa10 sequence of S. salar is also found in very diverse species, including in the primitive bony fish Polypterus bichir, which branches off before the genome duplication of 400 Mya, and in the frogs Rana pipens, Xenopus laevis and Xenopus tropicalis, with more than approximately 88percentt similarity over a 490 base pair sequence.
Thus, these data can be interpreted as indicating that the two species diverged from a common progenitor before the duplication and diversification of toxins from the two families had occurred.
In this manner, 42 out of 45 stilbenoid biosynthetic genes annotated in the microarray were differentially involved in these two expression profiles and all of them were located in two gene clusters at chromosomes 10 and 16 (Additional file 5), which suggest a functional diversification of grapevine stilbene synthase (STS) promoters before the extensive duplication of these genes.
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