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Before starting the algorithm description, some of the basic terms, which are defined in previous papers and used in the following section, will be mentioned here: The order of ligand interaction atoms that is generated by a circular walk around the ligand is referred to as interaction atom order.
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Before starting the alignment algorithm, the user has the possibility to manually specify homology relations.
Attainment of a steady state is not required, and only raw guesses of the kinetic constants are required before starting the fitting algorithm.
Before starting the matching process, the algorithm segments the trace in the following manner: firstly, the algorithm scores every trace point.
Due to a lack of evidence for major changes to the algorithm before starting the trial, it was decided to include those variables as possible mediators.
All systems were energy minimized for 10 000 steps of the conjugate gradient algorithm before starting the MD.
As before, we wait for 10 steps before starting the iterations, to give time for Algorithms 2 and 3 to obtain reasonable approximations of ‖ Υ ‖ and ‖ Υ − 1 ‖ − 1, respectively.
In this case, the community detection before starting the node removal is the bottleneck of the entire CbCI algorithm, and the CbCI algorithm is slower than the CI algorithm.
According to the Algorithm 1, the proposed method has to apply the quadtree decomposition before starting the matching procedure.
A weakness of the algorithm proposed in our study is the need for manual adjustment of threshold levels before starting the batch analysis.
This question was asked before starting the events.
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