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Beta-tubulin (TUB) has frequently been used in phylogenetic studies of fungi, including Verticillium [40], [41], [42], [43].
Consequently, gene order data has been used in phylogenetic reconstructions of mitochondrion and chloroplast genomes [4] [6] as well as bacterial genomes [7].
Unfortunately, few nuclear markers have been used in phylogenetic systematic studies in the past.
However, few nuclear genes, besides some rDNA sequences, have been used in phylogenetic studies [ 26].
This approach is similar to the "nodal stability" approach [ 20] that has been used in phylogenetic tree inference.
Plastid and nuclear ribosomal DNA loci (nrDNA) have predominantly been used in phylogenetic studies of flowering plants [ 2– 7].
Similar(47)
The PROTGAMMAJTT model was used in phylogenetic analyses using RAxML.
Plants have good morphological and developmental features that can be used in phylogenetic analysis; there is a good fossil record of plant evolution; and the phylogenetic relationships of the major plant groups are well supported by data.
Protein sequences were used in phylogenetic analysis.
The internal transcribed spacer regions are used in phylogenetic as well as in barcoding studies of organisms especially in fungi and plants.
While further work will be required to establish if this is a potential metric that can be used in phylogenetic analysis.
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