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The sheep genome, too, has been sequenced to approximately 2× coverage (primarily for SNP discovery) [ 15].
As of this writing, the mouse lemur genome has been sequenced to approximately 150 × coverage at the Baylor College of Medicine genome center, using Illumina Hi-Seq and Pacific Biosciences RS platforms (Rogers J, personal communication).
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The genomes of Bpp5, 253, MO149, and 18323 were sequenced to approximately 6 to 9-fold coverage with ABI3730 sequencers [ 20].
Two well established cohort studies in the UK; TwinsUK and the Avon Longitudinal Study of Parents and Children (ALSPAC) provided four thousand of these samples, which were sequenced to approximately six fold coverage of their entire genome, generating a detailed sequence reference database connected to phenotypic and clinical data.
Here, the genome of R. flavefaciens FD-1 was sequenced to approximately 29×-coverage, and the resulting collection of contiguous sequences screened for open reading frames (ORFs) that may encode proteins involved in fiber-degradation.
The genome of S. suis strain P1/7 was sequenced to approximately 8-fold coverage, from pUC18 (insert size 2.8 3.3 kb), and pMAQ1b_SmaI (insert size 3.0 3.3 kb) genomic shotgun libraries using big-dye terminator chemistry on ABI3730 automated sequencers.
The CL Brener nuclear genome was sequenced to approximately 7X coverage, and Esmeraldo to 2.2X coverage.
Both samples were sequenced to approximately 150 × per-DNA strand fold coverage.
The PCR products were sequenced to approximately 20,000 depth of coverage using the Illumina Hiseq.
These genomes were sequenced to approximately 1,000× depth and SRST2 correctly detected vanA-B in 17/17 VRE.
Relative to the bank vole, the fox transcriptome was sequenced to approximately 6.2 times greater depth and the assembly span was higher by 2.7 times.
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