Based on the search results, isogroups (i.e., groups of contigs that correspond to a gene) were then resolved to single best representative coding isotigs/contigs (i.e., mRNA) based on consistency of BLASTX top hits; each isotig/contig has a single, longest best scoring hit to the databases.
Only the specific tags assigned to genes (A "specific" tag is defined as a tag that uniquely matches to a single gene or that can be resolved to a single gene by taking the lowest position match [ 32]) were used.
Complex targets that cannot be resolved to a single EGID (e.g. the 20s proteosome) are not included.
Even though 44% of the tested samples could not be resolved to a single species because they belonged to one of the polyploidy complexes described above, all samples could be resolved to genus level.
Moreover, even when a transient multi-cluster intermediate was observed, the process whereby such early intermediates were resolved to a single front remained unclear.
tRNA genes from the serine, glutamatic acid, glycine, initiator methionine, threonine and arginine tRNA families could not be resolved to a single cluster.
Moreover, this aggregation is mediated through the mutant A-domains alone (Fig. 6A; right panel) and can be resolved to a single molecular form on reduction (21, 30) (and not shown).
Finally, purple alerts that the entered term matches a synonym that cannot be resolved to a single official term; since the curation tool cannot resolve which official term was intended, the biocurator must resolve it and re-enter a new term to continue.
Three observers scored and discrepancies were resolved to give a single score for each core or section.
In the extreme case are genes that have resolved to single copy within a few million years after duplication in many independent lineages.
