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It has been predicted through genome annotation that the nub gene contains two independent transcription units (nub-RB and nub-RD) that each encode one specific protein variant: Nub-PB (104 kDa) and Nub-PD (65 kDa), which share the C-terminus, including the DNA-binding POU and homeodomains, but differ in their N-termini (Additional file 1).
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In this approach, genome-wide breeding values (GW-EBV) are predicted through the use of dense markers covering the whole genome [ 7].
For the remaining tomato housekeeping genes, exon/intron boundaries were predicted through alignments [ 42] involving amino acid or nucleotide sequences from Arabidopsis and tomato, and based on information about exon positions from Arabidopsis Genome Project.
There is very little in the 390 pages of Venter's autobiography that could have been predicted from knowledge of his genome.
Also, a relatively minor portion (23%) of the closed chromatin detected in our genome-wide analysis has been predicted as "active" states 1 through 3 and a similar fraction of open chromatin (26%) – as "inactive" states 6 through 9.
Through detailed analysis of the genome possible functions that may be associated with mediating CV have been predicted [see Additional file 10].
The pairwise and reciprocal genes-to-genome comparisons allowed us to account for the genes that were predicted in one genome but not predicted in the other.
No prophages were predicted in the genome of SLCC2376.
First, genes are predicted from the genome sequence.
A second constrain in the profiling experiments is represented by the difficulty in matching the registered signals with the theoretical molecular weight of hypothetical proteins, predicted through genome annotations and/or EST libraries.
Fifteen putative Pex genes are predicted in the Drosophila genome.
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