Mechanistic, kinetic, and thermodynamic information is extracted from experiments in combination with digital simulation.
Nevertheless, this chapter points out what are the required data, which should be extracted from experiments.
Note that all molecular parameters used in the model are extracted from experiments on dsDNA and RecA.
c The microarray data were extracted from experiments performed in our laboratory for a parallel analysis.
Realistic empirical parameters had to be extracted from experiment, consequently purely numerical studies were not possible.
Regulated datasets have been extracted from the array experiment using stringent statistical criteria (false discovery rate correction by the Benjamini-Hochberg method).
However, some common characteristics of dipeptide uptake can be extracted from the experiments: except for the rather bulky compound AC-CA, all other l-alanine (A) containing dipeptides were taken up very fast.
Protein or RNA was extracted from independent experiments as already described.
Some of these parameters (such as the diffusion coefficients of Ft and Ds) could be extracted from the experiments presented.
To overcome this important limitation, we identified multiple types of data that could be extracted from the experiments.
