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Details on the required and deposited on-line information are described below.CEL files for the 18 cell line microarrays have been deposited at http://www.ncbi.nlm.nih.gov/geo/ under GEO accession number GSE22759.
SAXS data have been deposited at http://www.bioisis.net.net
All EST sequences and unigenes have been deposited at http://bioinfo.pbi.nrc.ca/portal/flax/.nrc.ca/portal/flax/
For reference of the specific parameters, the Bayes block has been deposited at http://dx.doi.org/10.12761/SGN.2015.1.org/10.12761/SGN.2015.1
Sequence alignments corresponding to the structured RNAs in Figure 3 are available as Additional file 1, Additional file 2, and Additional file 3. Nucleic acid probing data displayed in Figure 6 has been deposited at http://snrnasm.bio.unc.edu.
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The whole genome project has been deposited at https://submit.ncbi.nlm.nih.gov/subs/wgs/ under Bioproject number PRJNA284314.
Redundancy was limited only to the extent that multiple chains with identical sequences from the same PDB file were removed, and the complete list of PDB chain identifiers was deposited at http://mammoth.bcm.tmc.edu/lisewski2008/np.list.
Obtained data are deposited at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi acc=GSE27010.nih.gov/geo/query/acc.cgi acc=GSE27010
The data set was deposited at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi acc=GSE42732.nih.gov/geo/query/acc.cgi acc=GSE42732
Gene array data were deposited at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi acc=GSE63643.nih.gov/geo/query/acc.cgi acc=GSE63643
The raw and cbs-smoothed aCGH data are deposited at http://rock.icr.ac.uk/collaborations/GrigoriadisA/.icr.ac.uk/collaborations/GrigoriadisA/
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