Molecular subtypes can be defined by microarray testing and this classification approximated using IHC results of ER, PgR, HER2 and other proliferation biomarkers.
So, although the experimental-variable subsets of GEO microarrays are defined by microarray developers, and the experimental variables are subjected to the hypothesis that the researchers wanted to investigate, these micrroarray data can be reused for investigations around the world even when their hypotheses are completely different from the originals.
The implicated chromosomal regions were defined by microarray analysis, the patient had a trisomy 1q41-qter of 30.3 Mb in extension comprising about 240 protein coding genes and a monosomy 3p26.3-pter 3p26.3-pterncluding ofly the genes CNTN6 (MIM 607220) and CHL1.7MbM 607416), whincludingbeen implicated in dendrite develonlynthe
The next level of clustering was defined by the microarray platform used for the studies.
The new data matrix need not be defined by a microarray, it could easily be the result of RT-PCR or any other expression assay, imported into R as a tab-delimited text file.
In order to give biological annotation to REGs, we decided to utilize microarray data to predict the biological responses of cis-elements that are defined by the corresponding microarray experiments.
The chromosomal regions involved were defined by high-density microarray techniques and their effects in the phenotype regarding the definition of the syndromes are discussed.
Expression divergence between 2 probesets is defined by Euclidean distance of the relative abundance, converted from microarray log expression value, using 9 orthologous tissues.
Our RUD values were based on microarray probes targeting cUTR and aUTRs that are defined by proximal and distal poly(A) sites.
Significance codes are defined by the intervals: '***' < 0.001 ≤ '**' < 0.01 ≤ '*' < 0.05 Microarray data for RT-PCR validated microRNAs, see description of Table 1.
