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Additionally, in a genome wide expression analysis, co-variation of expression of gene pairs has been attributed to sequence similarity metric in the upstream region of promoter predominantly contributed by Alu repeats present in these regions [ 36].
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In particular, our findings may explain why genome sequencing efforts have failed to register these sequence deviations or, if detected, why they may have been attributed to sequencing error and eliminated during curation.
The differences can be attributed to sequence effects rather than structural effects.
According to Goicoechea (2009), this seemingly controversial placement of Oryza brachyantha could be attributed to sequence conservation between AA and FF genomes in some of the loci under investigation.
Evidence suggests that the lack of HIV-protective immunity is attributed to sequence divergence between autologous and consensus antigens.
The large branch found for Myotragus in the phylogenetic tree (Figure 3) could be attributed to sequence changes due to DNA damage or to an accelerated evolution of the Myotragus genome.
A change in filtering settings would affect both data sets, with the difference remaining, and it is likely that this difference can be attributed to sequence length (average mRNA length 1784 bp).
A low level of branching in the yeast dataset is attributed to sequence variation (branch rate).
This might be attributed to sequence and structural motifs controlling the editing efficiency.
More likely, divergences may be attributed to sequence uncertainties in the Bianchera plastome sequence deposited in GenBank.
The rapid evolution of intron sequence was attributed to sequence divergence ratios in LSC and SSC (Additional file 7: Figure S2).
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