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Escherichia coli strains have been assigned a putative role in the pathogenesis of CD.
Since the discovery of LmrA, a Pgp like half transporter in Lactococcus lactis [10], many bacterial ABC transporters have been assigned a putative MDR function based on bioinformatic classification [11].
Another gene of particular interest is gp17 encoding a protein that has not yet been assigned a putative function.
Most PA73 proteins show limited similarity to others in the NCBI database and have not been assigned a putative function [ 33].
Each sequence has been compared to the KOG database and ~67% of the sequences have been assigned a putative functional category.
Although gp9 shares 100%% identity to uncharacterized ORF008 of PA73, it has been assigned a putative function due to its high similarity to the F-like head morphogenesis protein of Ab26 (Table 3).
Similar(54)
With these criteria, 40,238 (59%) sequences were assigned a putative protein ID, of which 14,838 were unique.
A total of 1738 predicted protein-coding genes were identified; however, only a minority of these (38percentt) could be assigned a putative cellular role with high confidence.
2155 of the A. arilaitensis protein-encoding genes (62.7%) were assigned a putative function.
The four replicons combined contain 6,631 protein coding sequences (CDSs), of which 4,898 (73.8%) could be assigned a putative function.
Of the predicted protein-coding genes, 1,408 (65%) could be assigned a putative function, whereas 768 (35%) encode hypothetical proteins, with 38 (1.7%) of all protein-coding genes classified as pseudogenes.
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