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Parental RADseq tags have been assembled into clusters and used as references for assigning offspring genotypes in plants [ 17, 19] and animals [ 22, 23].
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These raw data were assembled into clusters using the Inchworm assembler of the TRINITY r2001-5-13 pabovee, aboveove.
The resulting sets of cleaned sequences were assembled into clusters of overlapping sequences using the CAP3 assembler [ 54], with individual base quality and default parameters.
In the paper-based instruments, items were assembled into clusters, as described in Annex A1 of Technical Report (OECD 2013).
Although some sensor molecules were found to be isolated, many of them were assembled into clusters featuring an area of 0.04±0.01 µm2 (n = 22 different clusters from different maps) and an equivalent diameter of 230 nm (calculated assuming a circular shape).
After 24 h from the start of aggregation, the globular oligomers were found to be assembled into clusters (Fig. 6B), while at 48 h bundles of fibrils, almost totally submerged by non fibrillar material, were observed (Fig. 6C and Fig.S6).
The remaining 1037 sequences were assembled into clusters (≥two ESTs) and singletons (one EST) based on the following criteria: sequence match size of 20 bp, minimum match percentage of 85%, 0.00 gap opening penalty, 0.7 gap length penalty, and minimum sequence length of 70 bp.
Using CD-HIT-EST, scaffolds were assembled into clusters that were analyzed for consensus.
ESTs were assembled into clusters and incorporated into the TBestDB database [34].
The 276 738 ESTs were assembled into clusters using TGICL, which gave 19 257 contigs and 57 533 singletons.
All sequences were assembled into clusters and annotated using the PartiGene pipeline [ 83].
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