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It should be noted that a portion of genes in the silkworm have been not well-annotated or have been annotated with the designation "Unknown function", which may result in the underestimation of the influence of genes in SDs.
The "Gene set size" is determined based on the protein coding genes in the genome that have been annotated with the specific pathways by the respective database.
We note that the 40 compounds have been generated by rule sets for which at least one gene in E. coli has been annotated with the same corresponding EC number.
Eukaryotic U-snRNAs from Rfam have been annotated with the INFERNAL package with multiple alignments and conserved secondary structures.
First, we extracted all proteins that have been annotated with the target term or one of its descendants that are connected with a is_a relation.
The conserved protein domains and sequence similarity features offered the highest overall performance, despite removal of homology within KEGG Orthology (KO) groups (groups of gene orthologs sharing similar functions that have been annotated with the same conserved pathway by KEGG) from the model.
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Each genotyped SNP was annotated with the Ensembl annotation.
Upon quality control, probes were annotated with the current annotation files (version 32) for the proper array format.
Variants were annotated with the Ambry Variant Analyzer, a proprietary alignment and variant annotation software (Ambry Genetics).
Gladstone's own books in the collection tend to be annotated, with the scrawl of "surely quite wrong" next to a treatise on Irish politics.
The edges are annotated with the corresponding measurements of the ranging pulses.
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