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The draft genome assembly has been annotated, using the genome annotation pipeline MAKER [ 14, 15].
Recently, 81 Brachypodium WRKY transcription factors have been annotated using the NCBI automated computational analysis pipeline.
Assemblies of the BAC clone derived genome sequence have been annotated using the Pre-Ensembl and Ensembl automated pipelines and made accessible through the Pre-Ensembl/Ensembl browsers.
InterProScan [ 34] was used to perform a protein domain analysis on 13,504 of the clusters, 6913 of which had been annotated using the BlastX method previously described.
Assemblies of the genome sequence have been annotated using the Pre-Ensembl and Ensembl automated pipelines and made accessible through the Pre-Ensembl/Ensembl browsers.
To facilitate gene identification for functional genomic studies, each data set has been annotated using the structured vocabulary provided by the Gene Ontology Consortium (2001), based on molecular studies of the gene function in Homo sapiens.
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Experimental pairs were annotated using the annotated unigene transcriptome library.
The genome sequence was annotated using the prokaryotic annotation pipeline at the National Center for Biotechnology Information, Bethesda, USA (NCBI).
The corpus consists of scientific abstracts that were annotated using the same annotation guideline used for the CEMP task.
The assembled sequences of the three genomes were annotated using the GenDB annotation system [ 100].
Among them, 19 could not be annotated using the known annotation databases.
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