Sentence examples for been annotated to code from inspiring English sources

A total of 22 genes have been annotated to code for proteins harboring GGDEF, EAL and HD-GYP domains that are involved in the synthesis and degradation of cyclic di-GMP (7 with GGDEF domain, 2 with EAL domain, 7 with both GGDEF and EAL domains and 6 with HD-GYP domains) [ 62, 63].

A coding nucleotide is overlapping if and only if that position is annotated as coding in both predicted models, otherwise the nucleotide is not overlapping.

Notably, KAAS has been applied to protein coding sequences from several metagenomic samples, and their annotated KEGG pathways and other classifications are already available (http://www.genome.jp/kegg/catalog/org_list3.html).jp/kegg/catalog/org_list3.html

By investigating annotated goat mRNA, transcript coding for SKA2 was found to be annotated in the goat genome, suggesting that mir-301a is not intragenic in goat.

After removing rRNA reads, for each of the substrates tested, 74.3% to 84.2% of the reads were mapped to previously annotated coding regions, and the remaining were either upstream of a coding sequence (CDS; thus putatively identifying a 5′-untranslated region (5′-UTR)) or mapped to unannotated or potentially mis-annotated regions.

A closer examination of the Ensembl transcript in which this region was annotated as a UTR ([ENSANG T00000021028]) revealed that it was erroneously marked as a UTR as there was no stop codon where the annotated coding region apparently ended.

All Ensembl-annotated NPAP1L orthologs were predicted to be protein coding by the Ensembl pipeline (Potter et al. 2004).

Also, multiple alignments built from annotated genes were constructed to cluster the protein coding sequences and pseudogenes based on sequence similarity.

The repeats have been further hyperlinked to the annotated gene regions (coding or non-coding) and a link to the corresponding gene record in National Center for Biotechnology Information www.ncbi.nlm.nih.gov/) to identify and understand the positional relationship of the repetitive tracts.

Firstly, our algorithm for searching potential causal variants was restricted to well-annotated protein coding regions.

The data are linked to annotated terms on-demand basis.