Sentence examples for been annotated in this from inspiring English sources
Once all output identifiers had been annotated in this manner, we calculated a score based on the number of input identifiers (In), the number of input identifiers for which at least one output identifier was returned (Hits), the total number of returned output identifiers (Out), and the number of preferred output identifiers (Matches).
Seven genes had been annotated in this segment of D. mojavensis chromosome 2 and we designed primers to amplify the intergenic region between each pair of genes in this species, as well as in D. buzzatii strains with and without inversion 2z3.
However, when an enzymatic activity has been annotated in this way, it may well be wrong if other genes of the same pathway are not in the genome [ 10].
Second, the application of GO analysis is unlikely to completely describe the function of genes transcribed during mammary development as many genes have not yet been annotated in this biologically unusual context.
Authors' response: We also identified two PINs (VapC) in N. equitans (see Additional File 14) but not the corresponding antitoxins that apparently have not been annotated in this genome as indeed follows from the Supplementary Material in [ 35].
No gene had previously been annotated in this region, but a large number of expressed sequence tag (EST) cDNA clones are annotated according to the GBrowse genome browser at FlyBase (Tweedie et al. 2009).
To date no known genes have been annotated in the vicinity of this chromosomal region based on alignment with Ensembl-Database.
Three porcine pseudo-genes and four novel genes were annotated in this region.
For this analysis, the number of sequences with significant identity to each metabolic gene in a functional category in the SEED subsystem database were normalised to the sequencing effort for each sample (Fig. 1) and sequences which could not be annotated in this way were not included.
These form a useful resource for benchmarking, but since a rather small fraction of functional sites are likely to be annotated in this database, the benchmark here uses synthetic sequence that contains embedded REDfly footprints as well as synthetic samples from PWMs, as described in Materials and Methods.
