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To date, almost 22,175 protein-coding genes have been annotated, based on the bovine and human genome annotation data available [ 18].
The genomic loci of 966 genes have been annotated based on the ensemble databases and 168 genes were found having at least two duplicates located on the same zebrafish chromosome.
A limited number of lncRNAs had been annotated based on descriptions from the literature or cDNA evidence.
We further limited these lists to those genes that have been annotated based on experimental evidence resulting in 150 stress-related genes after removal of duplicates.
These flavonoids have been annotated based on UV and MSn spectra and, if possible, compared with spectra published in the literature.
In bananas, small RNAs (sRNAs) have been annotated based on the 'Pahang' A genome sequence similarities with known miRNAs in other species using bioinformatic methods [ 28, 29].
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Identified SNP locations were annotated based on UCSC annotation databases and dbSNP using annovar annotation software [ 56].
Both tools were trained on scientific abstracts, but the training corpora comprise different articles and were annotated based on different annotation guidelines [31].
All methylated genes were annotated based on GO annotation.
The DETs were annotated based on NetAffx annotation data for cotton GeneChip (http://www.affymetrix.com).
Only the tags displaying zero or one mismatch were annotated based on the reference genes.
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