Because the transcripts of UTP14C and GT8 overlap the possibility of a single transcript containing open reading frames from both genes arises.
For this analysis, we used microarray data obtained from oligo-dT primed transcripts because the transcripts of most protein-coding have poly(A) tails.
These results strengthen the idea that bradyzoites do not have an active TCA cycle because the transcripts of the key enzymes in the TCA cycle were less abundant in chronic infection compared to acute.
Estimates of the genome-wide fraction of expressed genes can be inflated by false positives, i.e., genes that, while not expressed, show above background signal intensity because their probes cross-hybridize with the transcript of a closely related gene.
The ends of intragenic transcripts could not be identified, because the appropriate transcript overlaps with the transcript of the annotated gene.
The observed (> 5 times) increase in OPDA level during K-deficiency is particularly interesting because the transcript profile of K-deficient plants overlaps strongly with that of OPDA-treated plants ([ 18], Supplemental material SI4A therein).
Few studies have been published because the transcript profiling of C. albicans from infected tissues presents significant technical challenges (reviewed by Brown et al., 2007).
Water deficit might have significantly increased glutamate catabolism, because the transcript abundance of GAD was increased significantly in Cabernet Sauvignon (p = 0.0014) and Chardonnay (p < 0.0001).
The third column shows the number of reporters eliminated because they align to the transcripts of more than one gene.
We originally identified AtRabD2b and AtRabD2c because the transcript accumulation patterns of these two genes correlate with those of many genes associated with starch metabolism.
