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Because the input sequences differed in length, the range obtained for the MFE of these structures was −21.5 to −302.42 kcal/mol.
This makes sense because the input sequences in these four TFs are much longer than that in Gcn4p (52bp v.s. 12bp), which significantly increases the difficulty level of regression.
The majority remains unmatched, primarily because the input sequences include ones from earlier annotations of the genome which have been eliminated in later versions; in searching our MS data against them we saw that some were falsely excluded since they match peptide spectra, however, we inevitably include protein sequences that are not actually translated.
Similar(57)
Because the sampler classifies the input sequences at the same time, it can be used to generate subgroup profiles, in which functionally-divergent categories of residues are annotated automatically.
The input sequences are provided in the FASTA format.
The others can "remember" only subsets of the input sequences.
The input sequences are 20 sequences.
The input sequences are individual exon sequences in fasta format.
The HMM is trained on the input sequences.
Therefore, a solid preprocessing of the input sequences is essential.
The input sequences can be uploaded in a.gz compressed file.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com