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The differences are partly because of tandem duplications in T. parvula of single copy genes in A. thaliana and preferential amplification of genes with known or assumed functions in stress defense responses.
Our analysis revealed 16 M-type genes, which could have originated because of tandem duplications.
That is, duplicate pairs tend to be located in the same chromosome because of tandem gene duplications, compared to randomized singleton pairs (Chi-squared test: χ=17.2, d.f. = 1, P < 10-4).
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Because increased numbers of tandem domains can dramatically augment structural or functional complexity by expanding the folding pathways available in repeat proteins [ 36, 37], the large numbers of repeats in many HMM motif-containing ORFs could offer extensive ensembles of interacting domains.
Because of the existence of tandem duplicates, it is hard to sequence these clones.
Because of five tandem ankyrin repeats NY-BR-1 could also have a role in protein-protein interactions [ 49].
We found that the Illumina Synthetic Long Reads assembly failed in the Mst77Y region, most likely because of its tandem duplication structure.
Because of the tandem structure of the duplications in the Abp gene regions, we used dot plots to identify duplication blocks and breakpoints (Additional files 1 and 2).
The MSP1a of A. marginale strains differs in molecular weight because of a variable number of tandem 23-31 acido acid repeats and has proven to be a stable marker of strain identity.
Because of their instability, use of tandem repeats as genotyping targets can lead to problems with data interpretation and to overestimation of genotypic diversity by showing small variations in MLVA genotypes in isolates of otherwise identical background.
However, because of the high cost of tandem mass spectrometers and limited commercial availability of isotope-labeled standards for OWCs, alternatives such as structural analogues or related compounds see continued use (12, 20).
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