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Deviation from expectation is likely to occur because of genotyping errors due to batch effects.
The position of several markers (Satt716, 24299, 28425, 16649, and 13055) on the genetic map may be not accurate because of genotyping errors.
We investigated the reason for this substantial difference between the single and multiple SNP test and concluded (see below) that the unusual difference between the tests was because of genotyping errors and batch effects.
This approach derives from the expectation that because of genotyping errors, the probability of finding false recombinants between absolutely linked markers is higher than observing absolute linkage for closely (but not absolutely) linked markers.
For the analysis of imprinting effects, we used all 94 F2 animals and 331 F3 animals out of 345 for our QTL analysis because of genotyping errors in some individuals.
Similar(55)
Where it was necessary to resolve ambiguities in IBD sharing, or inconsistencies because of genotyping error or possible recombination, parents were also typed.
The standard of genotyping was suboptimal, with a significant number of genotyping errors made.
Progeny genotypes were further investigated for evidence of genotyping errors (error.prob < 0.01).
There are two broad categories of genotyping errors (Kang et al., 2004): operational errors and genotype scoring errors.
On the other hand, allele dropout is one significant cause of genotyping errors.
Our study focuses on the relative contribution of genotyping errors and duplication effect.
More suggestions(11)
because of experimental errors
because of genotyping problems
because of medical errors
because of procedural errors
because of statistical errors
because of past errors
because of Mendelian errors
because of administrative errors
because of rounding errors
because of diagnostic errors
because of random errors
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