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The chimpanzee beacons were calculated using the exact same methodological algorithm as the human, but instead changing the focused species to Pan troglodytes.
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Based on the registered times, distances between transmitter and receivers installed on beacons are calculated.
Positive beacon clusters were calculated, via a sliding window of 1 kb and slide of 100 bases across the genome.
Additionally, templates were folded and secondary structures avoided using MFold programme and beacon hairpin melting temperatures were calculated using the Zucker software.
Initial density permutations were calculated for each CpG beacon by counting the number of CpG beacons within a region of 499bp downstream and 500 bp upstream.
For CQ-selection, R and S were calculated from the K76T Pfcrt molecular beacon genotype based on prevalence of infected individuals for each allele.
In order to investigate the effect of the network density on the beacon signal, the probability of the beacon collision is calculated by varying the number of the multi-hop flow is shown in Figure 15b.
Similarly, the average power consumption for receiving the beacon and Ack is calculated using (28).
So the fair share for A P i in the beacon interval is being calculated by all of its one hop neighbors'.
Then, the initial delay before the broadcast of first temporary beacon by the coordinator is calculated by using (2).
The size of beacons used by RR-ALOHA was calculated in as follows: (8).
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