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Motivation: Conserved patterns across a multiple sequence alignment can be visualized by generating sequence logos.
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The resulting correlation values are visualized by generating new edges between correlating nodes.
The resulting shape vectors were visualized by generating synthetic skull outlines in Past, version 3.0.
Third, the diversification rates were visualized by generating multiple lineage-through-time plots (MLTTP) for 50 randomly selected trees from the tree pool output from BEAST using the R packages APE and GEIGER, plus lineage-through-time plots (LTTP) for the consensus chronogram with a mean node age.
Control siRNA-transfected CAFs organized collagen into thick bundles that could be visualized by second harmonic imaging and generated elastin fibers that could be detected by their auto-fluorescent properties.
The high degree of polymorphism in the size of the tandem array can easily be visualized by gel-separation of PCR products generated by primers placed in the flanking regions, on either side of the SSR.
The expression profile can also be visualized by heatmap presentation, using the expression data generated with the RΔtvalues.
We generated a genetic mouse model in which TSHβ expression dynamics in the PT can be visualized by bioluminescence.
Clustering results were visualized by heat maps generated using the R 'NMF' package [ 21].
To investigate the effect of MAL overexpression on global gene expressions, data were visualized by an initial PCA generated in Partek Genomics Suite (Supplementary Figure 1).
Gene expression was visualized by ISH, using anti-sense probes generated with digoxigenin-labeled nucleotides.
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