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The YCCPN described in this paper can be visualized and explored on the project web site at http://pathwaynetworkanalysis.org.org
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This output can be converted into other alignment formats such as SAM/BAM, or imported into genome browsers, such as SeqMonk, where it can be visualized and further explored by the researcher without requiring additional computational expertise.
The transcriptomes of each strain were visualized and compared in different growth phases in order to explore potential physiologic differences in the host.
The flow patterns were visualized and analyzed.
All networks were visualized and analyzed by Cytoscape 3.2.
The scaffolding was visualized and performed with the Irys Viewer.
While complex, recent progress in information and application [9] of statistics suggest that such descriptions are possible; the challenge is to visualize and explore the data in ways that allow decoupling of various local dynamics under external physical and chemical stimuli.
We have created an open source software tool called FORG3D that can be used for visualizing and exploring integrated genome scale data.
Metabolon clients have access to the MetaboLync portal which includes a list of metabolites in their sample with comparison to an in-house library of over 14,000 compounds for automatically verifying metabolite identification, says Bernard, adding that the most powerful feature of the portal is the ability to visualize and explore data at the pathway level.
The aim of this study was twofold: firstly, to visualize and explore the spatial pattern of classical scrapie in Great Britain between 2002 and 2005 and secondly, to investigate the association between selected environmental and farm-related risk factors and the occurrence of the disease.
Open sourcing the project, according to Belmonte, is a way to help others be able to quickly and easily visualize and explore their own data sets, including very large collections.
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