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In many cases the identity of a pathogen may not be known or the pathogen's genome may be very divergent at the nucleic acid level from that of known family members, necessitating analysis by means other than mapping reads to a reference genome.
Third positions were excluded because most of the 61 chloroplast genes were claimed to be "very divergent" at synonymous sites (Ks for most genes between Pinus and angiosperms was between 0.50 and 1.50 substitutions/site), which they felt could lead to "misleading" phylogenetic results.
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On one side, the overall picture of current knowledge seems to suggest that the ways segments are made in distant groups of segmented bilaterians, such as insects and vertebrates, are very divergent at morphogenetic, cellular and genetic levels.
This taxon was described as a member of the sorella group from the Kapiti Plains in southern Kenya [ 57]. (MOTU 15) Mus sp. "Koi River" A single specimen from the moist savannah area near Koi River in south-western Ethiopia clearly belongs to the sorella group, but is very divergent at CYTB (K2P-distance between MOTU 15 and other lineages of the sorella group are 9.72-9.839.72-9.83%
When sequences are very divergent, the occurrence of multiple substitutions at a site (saturation) can cause the rate of synonymous substitutions (dS) to be under-estimated.
Further PCR and sequencing analyses showed that both clpC and ctsR are present in all the strains studied and for those strains whose clpC and ctsR were absent by CGR analysis, the clpC and ctsR sequences were very divergent with only 76% and 80% identity at nucleotide level respectively (data not shown).
"Inflation rates in Europe are very divergent," he added.
The basal antler is directed forwards and is very long, and the horns are very divergent, with terminal branches.
The inhibitory capability of these compounds was very divergent (Fig. 3).
These sequences are very divergent, with long-branch lengths.
Both were very divergent from the sequence in TU502.
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