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Homology modeling has been used to generate structural models of proteins, which can still be used as docking targets [65] [67].
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When the native conformer was used as docking input, the fraction of entries that have correctly predicted poses (RMSD ≤ 2 Å to the native binding pose) at the top-1 position was nearly doubled using MC optimization compared to pharmacophore matching only (Figure 6A).
We could not say which structure is better, the apo structure or holo structure, when Sievgene was used as docking software.
Wharf-like structures found at many port cities indicate that they might have been used as docks.
The non-redundant dataset created as part of this work could be used as a docking benchmark dataset particularly when the effect of side-chain flexibility needs to be taken in consideration in the analysis of the performance of docking algorithms.
When not running an app, the pane can be used as a dock for apps, a multi-tasking switcher, or a notification tray with calendar appointments and the weather.
The proton−iron distances can be used as constraints for the docking of ligands to CYPs.
(The waste can be used as fertilizer wherever "The Plastiki" docks).
The tablet can also be used as a desktop videoconferencing device when docked on a special desktop phone, and can smoothly switch between a Wi-Fi and cellular network connection.
It says tail docking should only be used as a last resort.
As an alternative, cross docking capability can be used as a reliable indicator towards the selection of suitable conformations for ensemble-based virtual screening.
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