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This approach assumes that the most diverged regions between species are most likely to be under divergent selection between species or important in reproductive isolation.
Of the seven amino acid sites previously identified to be under divergent selection among P. infestans IPI-Os [15], five overlap with the sites identified in our analysis.
However, a recent survey of polymorphisms affecting miRNA target sites in cichlids found that the 3'-UTR of some genes may in fact be under divergent selection in African cichlids [ 72].
The mating system also may be under divergent selection in invasion-front populations compared to those in long-colonized areas, reflecting spatial differences in variables such as population density.
This is likely to be a conservative threshold to highlight SNPs that have a large allele frequency difference between the subspecies pools and that could be under divergent selection.
A major finding was the discovery of two chromosome regions that are likely to be under divergent selection between the two subspecies and that could be involved in adaptations to their different migratory strategies.
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In addition, by comparing univariate and multivariate divergence of complex traits (Q ST)) to the genomewide distribution of SNP FST, we conclude that the aspects of phenology and morphology (but not physiology) are under divergent selection.
Moreover, beyond just estimating such selection, a difficult task in its own right, testing the dimensionality hypothesis requires experimentally manipulating different sources of selection to isolate which niche dimensions are under divergent selection.
In all three model comparisons, 5.6% to 6.5% of sites were identified as being under divergent selection (see details in Table 2 and supplementary Table S3, Supplementary Material online).
Clade model C showed 79%and62%2% of sites are under divergent selection in OBPs and CSPs, respectively.
In the absence of population structure, these correlations suggested that the alleles are under divergent selection.
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