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The two structures can be superimposed with an RMSD of 0.946 Å over 455 Cα atoms.

The matches are evaluated and kept if their constituent elements can be superimposed with an RMSD lower than the threshold currently in use.

The structures are very similar, and the Cα can be superimposed with an rmsd of 0.97 Å, considering 83 of the 100 amino acid residues (segment aligned Asp8-Arg90).

When comparing the binding sites of these two proteins superpose3D finds a structural match involving the Cα of eight different residues which can be superimposed with an RMSD of 0.66 Å. Dethibiotin synthetase belongs to the extensive group of nucleoside triphosphate hydrolases containing the characteristic phosphate-binding P-loop.

Indeed, the H1' for H1 replacement in metavinculin results in a new five-helix bundle (that is comprised of α-helices H1' and H2 H5; residues 959 1,130) that closely mimics the five-helix bundle found in Vt (comprised of α-helices H1 H5; residues 891 1,062), where it can be superimposed with an r.m.s.d. of 0.69 Å (for 153 equivalent Cα positions).

Despite the low degree of sequence similarity, the three repeats can be superimposed with an overall r.m.s.d. of 1.7 Å over 37 aligned Cα positions.

All four protein models are nearly identical and can be superimposed with a root mean squared deviation (r.m.s.d.) between 0.3 Å (structure (ii) versus (iii), 367 pairs of C-α atoms) and 0.7 Å (structure (i) versus (iii), 336 pairs of C-α atoms).

The individual monomers can be superimposed with a root-mean-square distance (r.m.s.d) of 0.91080 Å (Figure 4).

The crystal structure of human PRPPase and the modelled MtbPRPPase structure can be superimposed with a r.m.s.d. of 0.5 Å based on 303 Ca pairs (the two enzymes share a sequence identity of 44%).

The changes in the content of organic nitrogen had to be superimposed with a trend line to visualize the evaporation.

The dimeric structures of TySemiSWEET and LbSemiSWEET can be superimposed with a root mean squared deviation (r.m.s.d). of 0.64 Å over 144 Cα atoms.