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Enriched pathways can be selected for visualization and downloaded as a tab-delimited file.
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Gene sets with a nominal P < 0.001 and a FDR < 0.05 (based on a simulated null distribution of 1000 random gene set permutations and multiple-testing adjustment to control the FDR as computed by the BROAD GSEA software) were selected for visualization.
Straight, unbranched, postcapillary venules (15 to 50 μm in diameter) overlying the knee capsule were selected for visualization.
For 3seq data, only transcripts with at least twofold change were selected and for miRNA data, only miRNAs with at least an expression level of 1000 RPM and at least a twofold change were selected for visualization in JavaTree View.
Proteins contributing to the enrichment score for 'stress response (general)', or 'glycolysis/gluconeogenesis' that were increasing more than twofold with age, or proteins contributing to the enrichment score for 'mitochondria (general)' and 'DNA replication' that were decreasing more than twofold with age were selected for visualization (from Figure 3B ).
Transcripts contributing to the enrichment score for 'integral to membrane', or 'sporulation' that increased more than twofold with age, or transcripts contributing to the enrichment score for 'mitochondria(respiration)' and 'mitochondria translation)' that decreased more than twofold with age were selected for visualization (from A).
S-WF modelling and visualization can assist the creative activity of designing surgical integration profiles (SIP) which may subsequently be selected for surgical process redesign.
Vestas 90-type WTs (height 105 m, rotor diameter 90 m) were selected for the visualization.
Therefore, k = 25 was selected for further visualization in Java Tree View [ 37] and for data mining.
The top 50 DEGs of each list were selected for heatmap visualization (Fig. S3).
An examination of the significantly up- and downregulated genes revealed distinct gene families that were highly represented, and these were selected for further analysis and visualization.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com