With a simple click in UDECON, optimized deconvolution can be searched using two different methods (i.e., "Simplex method" or "Grid search") with adjustable choices of initial values or ranges for smoothness, position shift, and length correction.
The database can be searched using three methods: text search, advanced search or similarity search.
The details of TEs can be searched using six different search criteria such as TE IDs, type of TE, chromosome, etc.
Citations were searched using four comprehensive electronic databases for articles published between 2002 and 2015.
To identify these sentences, papers are searched using four Textpresso categories: (i) assay terms (e.g. GFP, reporter, expression), (ii) verbs (e.g. expressing, detected, localizes), (iii) cellular component terms (e.g. nucleus, cytoplasmic, plasma membrane) and (iv) gene product names (e.g. DAF-16, COSA-1, LIN-17).
This was done specifically for Palestine which was searched using three terms: Palestine, West Bank and Gaza and Occupied Palestinian Territories.
The corresponding MS data were searched using two different search algorithms – Mascot and SEQUEST - against the NCBI RefSeq human protein database 50 (N=33,832 proteins) with known contaminants.
From this, we acquired a total of 112,419 tandem mass spectra, which were searched using two search algorithms - SEQUEST and Mascot - against a total of 33,987 proteins as provided in the Human RefSeq database version 52.
Protein sets were used to construct 12 MySQL databases, which were searched using five amino acid motifs (table 1) that are present in less than 1% of non-OR rhodopsin-like GPCRs (Churcher and Taylor 2009).
Both databases were searched using the four key words 'climate change,'humanan health,'genderer,' and 'policy.' The keywords were explored individually and in combinations and the number of hits generated each time from both databases was recorded.
