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The software required that three essential programming instructions be saved in sequence: first, the quantity or dose of radiation in the beam; then a digital image of the treatment area; and finally, instructions that guide the multileaf collimator.
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The translated protein sequences have to be saved in the file sequences, which subsequently can be used as the input for GTPasePred.
This structural alphabet (SA) alignment can be saved in FASTA format for further sequence-oriented analyses.
The data flexibility means that it can handle most MSA formats, with each MSA obtained from orthologous and/or paralogous sequences, and can be saved in standard formats (PNG for images and GFF for data).
From BLAST search results, sequences of individual P450s can be saved in the Favorite for subsequent analyses.
Assuming the hypothetical transmission of sequences, the idea is to measure how much can be saved in this transmission, if one knows about the presence of the motif.
Both views can be saved in PDF format.
Additionally, the statistics can be saved in the Neo4j network.
Following the indexing of the reference transcriptome, the reads were then mapped to the reference transcriptome using Burrows-Wheeler alignment tool (BWA 0.5.9) with the default settings and the read alignment data was saved in the SAM (Sequence alignment/map) format.
Contig sequences from the shotgun sequencing were saved in MacVector with Assembler 9.5.2 http://www.macvector.com.
The flanking sequences were saved in CSV format using a Python script (See pileup2seq.py in Additional file 3) and submitted to Assay Design Tool (ADT) [ 28].
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