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Currently, ChemChains can be run in three modes, each producing different types of output formats.
FREEC can be run in three configurations corresponding to different normalizations of read counts within a window [see Additional File 1].
JAFFA may be run in three defined modes: assembling short reads (shorter than 60 bp), using long reads directly (100 bp or greater), or a hybrid approach that both assembles and processes unmapped reads (between 60 bp and 100 bp).
After extracting all the files from the downloaded zip file, TimeXNet can be run in three modes: 1. User Interface: TimeXNet can be run through a user-interface by double-clicking the timexnet.jar file.
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Modern pumped storage units in the United States normally use reversible-pump turbines that can be run in one direction as pumps and in the other direction as turbines.
Alternatively, the software can be run in two steps.
ConCavity can be run in two modes depending on whether it makes use of sequence conservation information or not.
The described system can be run in two ways: in training mode and processing mode.
There were no stalls with solid concrete alleys that had rubber mats in the cubicles, consequently stall base and alley had to be run in two separate models.
Most algorithms which rely on a genome alignment can be run in two possible modes, depending on whether or not they utilize transcript model annotation.
The small RNA-seq, RNA-seq and ChIP-seq pipelines can each be run in two modes, allowing analysis of a single sample or a pair of samples.
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