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Approximately 61% of the Human Infinium 450K probes could be reliably mapped to the Cynomolgus macaque genome and contain a CpG site of interest.
We excluded entries that cannot be reliably mapped to EntrezGene, such as ambiguous gene names or retired UniGene IDs without further traceable information.
Thus, in total, approximately 61% of the Human Infinium 450K probes could be reliably mapped to the Cynomolgus macaque genome and contain a CpG site of interest.
168 [ 22] demonstrated that lower-quality RNA-seq reads can still be reliably mapped to specific regions of the strain's genome, indicating that removal of lower-quality reads may lead to loss of biologically relevant information.
As reads of 50 100 bp will be reliably mapped to the corresponding contig, for RNA-seq obtaining many short reads is more helpful than obtaining fewer longer reads.
All paired-end and mate-pair (PEMP) sequence data that could be reliably mapped to the DM superscaffolds were combined to compute a composite directional link-score across each superscaffold.
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4 '170(39.5%) transcripts were reliably mapped to genome-predicted proteins (E-value <10-10 <10-10
MPSS had 6,572 signatures that were reliably mapped to UniGene IDs, out of a total of 34,341 unique tags detected in our library.
The mapping results showed that 66 such transcripts were reliably mapped to discrete genomic locations each with a single gene annotation in B. distachyon (coverage ≥ 90%%, mean identity 87%%) (Fig. 3a).
ChIP-seq experiments produce a large amount of short sequence tags which need to be reliably mapped back to the genome and processed to reveal biologically relevant signal.
The published mapping in CIC performed poorly in this OIC population, and the PAC-QOL could not be reliably mapped on to the EQ-5D-3 L even when re-estimating coefficients.
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