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"In the beginning our clients didn't know we were refactoring so many things," Mr. Smith said.
An emerging view is that if software metrics are going to be used to improve quality, they must help in finding code that should be refactored.
Google's advice was to build a database whose code could be "refactored".
Often refactoring or applying a design pattern is related to the role of the class to be refactored.
Interestingly, genomes that were refactored under stressful environments showed higher clustering coefficients than those that evolved under more permissive environments.
By contrast, genomes that were refactored without the design specification of tandem promoter addition had high error adaptation (〈 ξ〉 > 0.762), except for those refactored considering stress genes.
The more interesting case is when apps are refactored and take on a new structure that allows new capabilities to be added and existing capabilities to be used by more and more apps.
SEAL uses a version of the original BWA code base (version 0.5.8c) that has been refactored to be modular and extended to use shared memory to significantly improve performance on multicore systems.
We also compared these trends with remaining classes in the system that had not been refactored over the same periods.
It has recently been refactored to use the JEnsembl API to retrieve mapping data from JEnsembl.
Ondex Web was refactored from the Java libraries used in the Ondex desktop application.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com