Sentence examples for be queried for interactions from inspiring English sources
For instance, a data source with the Entrez Gene identifier system may be queried for interactions by using gene identifiers, another data source with the UniProtKB identifier system by using protein identifiers.
To generate networks, the knowledge base was queried for interactions between focus genes and all other gene objects stored in the database.
Different subsets of on-line resources can be queried for gene names and interactions and we show that it is possible to combine this data into a single SIF-compliant protein interaction network rich in information and amenable to Cytoscape import.
To address this question, all phospho- and nonphospho-proteins identified in TK6 (as listed in Additional file 1: Table S1 and Additional file 2: Table S2) were queried for protein interactions using the program STRING (version 8.2) (http://string-db.org/) [ 35].
For each SSU processome component, both IntAct (http://www.ebi.ac.uk/intact/) [60] and BioGRID (http://thebiogrid.org/) [61] databases were queried for protein-protein interaction data.
The IntAct protein protein interaction database (10) was queried for high-quality binary interactions for the 88 human proteins that have experimental support for peroxisomal location (IntAct database release 154).
Since overexpression of SRPX2 was shown to lead to an increase in FAK phosphorylation[ 16], IPA relationship database was queried for kinases that had direct interactions with both FAK (PTK2) and any of known SRPX2 interactors (PLAUR, CTSB and ADAMTS4).
BIND was queried for previously unreported homeodomain protein protein interactions in parallel with the aforementioned PubMed literature searches, using general (e.g. 'homeobox OR homeodomain AND interaction') to more specific (e.g. 'homeobox OR homeodomain AND interaction_object_type = protein AND NOT = DNA') search criteria.
Patients were each queried for 62 variables, while their physicians were queried for seven.
Drug-molecule interactions can be queried at the second level.
The pooled interactions can be queried in the following manner.
