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The advent of permanent down-hole gauge (PDG) makes the real-time reservoir monitoring and management possible, where the long term transient data can be processed to distill information about the reservoir through using recently developed wavelet transform algorithm.
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LTQ-FT MS raw data files were processed to peak lists with the Mascot Distiller software (version 2.2.1, Matrix Science, London, UK).
SILAC [24] studies can be processed by initial database searching with Mascot and then using the quantitation toolbox in Mascot Distiller (Matrix Science Inc).
MS/MS data were processed using Mascot Distiller to produce peak lists that were subsequently submitted to the Mascot 1.8 (Matrix Science, UK) search engine for database search.
Raw data files were processed with Mascot Distiller (version 2.5) prior to searching with Mascot Server (version 2.4) against a SwissProt Human database containing the construct sequences.
All MS/MS spectra were processed using Mascot Distiller software (Version 2.3.2; Matrix Science, London, UK) to convert the raw LC-MS/MS data of each technical replicate for each sample type (trichome-enriched, trichome-depleted and whole leaf sample) into Mascot Generic Files (.mgf files).
All MS data from the Q-TOF were processed using Mascot Distiller (v2.0) and the resulting peak lists (in mgf files) were searched again against ATH1v6 database concatenated with a decoy where all the sequences were in reversed orientation using Mascot with a significance threshold of 0.01.
MS raw data files were processed with Mascot Distiller (Version 2.3.2, Matrix Science, London).
LC-MS/MS data were processed using MASCOT Distiller software (Matrix Science) and searched against the TAIR database [ 64] using MASCOT Daemon Matrix Sciencee).
Acquired raw data were processed by Mascot Distiller followed by Mascot Search Matrix Sciencee, London, on-site license) against SwissProt database.
The data were processed using Mascot Distiller and searched against the Swissprot human database, using the in-house mascot daemon searching algorithm.
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