Sentence examples for be predicted as direct from inspiring English sources

The top-ranked interactions can be predicted as direct physical interactions (Fig. 1 d).

Interactions with BINM scores exceeds a predefined threshold can be predicted as direct interactions.

This is because that if the cutoff is too low, only a small fraction of direct physical interactions can be detected and we will obtain a low recall; while if the cutoff is too high, a large fraction of indirect interactions will be predicted as direct interactions and we will obtain a low precision.

Then observed interactions with high confidence scores are predicted as direct physical interactions.

For each microRNA, the proportion of transcripts that are predicted as direct targets by MiRanda (that is, with the recognition of a potential biding site) is also reported.

We identified significant motifs and then determined the optimal subset of genomic regions that are predicted as direct targets in all FruM data sets.

Since none of the confirmed genes modulated by overexpression of miR-300 or Bmi1 (Oct4, Nkx2.5, Tbx5, and vWF) are predicted as direct targets, our results suggest a non-direct effect.

Several indirect relationships among genes reported in the fruit fly KEGG pathway were predicted as direct ones due to the absence of microarray reporters corresponding to the intermediate genes.

For example, when we chose 0.5 as the probability threshold to infer the interaction type, >99% of positive DTIs predicted by our algorithm were consistent (i.e. <1% of DTIs were predicted as both direct and indirect interactions).

Notably, a third AP2 (PF3D7_0802100) was predicted as a direct functional pfcrt partner (Additional file 4: Table S3) in CQR but not CQS parasites (CQR r = −0.59, t = 0; CQS, r = −0.3, FDR ≤ 0.20).

Using miRanda (John et al, 2004) and TargetScan (Grimson et al, 2007) algorithms, KLF4 was predicted as a potential direct target of miR-29a.