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Such assembly can be performed using tools such as MetaVelvet [87] and Short Oligonucleotide Analysis Package (SOAPdenovo2) [88].
Correct estimation of the number of slow-cycling cells needs to be performed using tools that are independent of labelled nucleotides, such as by generation of transgenic lines expressing H2B-GFP under an inducible promoter.
Thus large data sets may be stored in a relational database and may be extracted and preprocessed using SQL, and then visualization, statistical analysis and data mining or pattern discovery may be performed using tools that researchers are already familiar with.
The empirical grasp synthesis chooses the most appropriate hand configuration for the object and task to be performed using tools such as learning by demonstration (Aleotti and Caselli 2010; Jakel et al. 2010; Kroemer et al. 2010), neural networks (Pedro et al. 2013; Leoni et al. 1998), fuzzy logic (Bowers and Lumia 2003), or knowledge-based systems (Bekey et al. 1993).
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Each step is performed using tools from knowledge engineering and information processing (natural language processing, ontology, indexation, algorithm, etc).
Although early studies of the outcomes of articular cartilage repair have been performed using tools designed for other surgical procedures, tools designed specifically for cartilage repair are becoming available.
In more recent times global systems analyses were performed using tools such as transcriptomics and proteomics [6], [7].
Comparative genomic analyses of pVT1 with related plasmids were performed using tools proposed by the annotation platform MicroScope at the Genoscope (Evry, France) [37].
Common bioinformatics analyses were performed using tools provided by the ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB) with default settings (http://swissmodel.expasy.org).org
Comparative analyses of H.orenii with related organisms was performed using tools and reference genomes available in the Integrated Microbial Genomes system (IMG) v.2.2 [28].
Analysis was performed using tools from FMRIB Software Library (www.fmrib.ox.ac.uk/fsl) (Smith et al., 2004).
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