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Experimental and/or biological replicates can be merged either using a mean of log ratios, or the Rosetta error model.
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Very similar concepts were merged either automatically by the software or by the researchers.
The ideas described in this paper where the graph models are either first partitioned using a partitioning approach like PAM or CLARA and the representative models in each cluster are merged using either a Bayesian scoring approach or from using their property of markov equivalence thus producing an essential model have similarities with ideas discussed in [35] and in [36].
These alignments can then be merged using N BAM files.
Then, the resulting networks were merged together using the Merge Networks tool of Cytoscape 3.0.
The assembled transcripts were merged together using the Cuffmerge software.
Reads were merged using FLASH v.1.2.1137,39 and merged reads shorter than 450 bp were excluded.
The remaining reads were merged using PEAR v0.9.659.
Illumina R1 and R2 reads are merged using FLASH18,19.
Images were merged using Photoshop 6.0 (Adobe).
Images were merged using Volocity software (Improvision Inc).
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