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These promoters should be located in intergenic regions and be followed by transcriptional terminators.
Surprisingly, activation marks H3K9ac and H3K4me3 are mainly shown to be located in intergenic regions in P. falciparum [ 16].
Genes that encode miRNAs can be located in intergenic regions or within the exons or introns of other genes.
Fourth, DSTs are more likely to be located in intergenic regions than expected by chance (Binomial Test, p = 0.00033).
Based on the results of previous transcriptome studies using the zebra finch genome [ 38, 51], a fraction of reads were expected to be located in intergenic regions.
LongSAGE tags of 15,892 from humans were found to be located in intergenic regions, many of which were generated from uncharacterized genes [ 19].
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Classification of SRF peaks with respect to the locations of genes revealed that a large fraction of SRF peaks were located in intergenic regions (37.1%) and introns (32.4%).
Of the total InDels, 1,511,754/76.7% were located in intergenic regions; 442,441/22.5% were located in genic regions, including intronic, splicing sites, exonic and untranslated regions; and the remaining 16,075/0.8% were located in up/downstream regions.
In the silkworm, about 50% of OCRs were located in intergenic regions: nearly 17% in 3′- and 5′-untranslated regions (UTRs), approximately 8% in the promoter regions, and roughly 25% in the gene body (Fig. 2b).
SNP annotation showed that 78.2% of the SNPs were located in intergenic regions (Gayal: 77.9%; RAN: 79.5%; JBC: 79.4%); 21.1% were located in genic regions, including intronic regions, splicing sites, exonic regions and untranslated regions; and the remaining 0.7% were located in up/downstream regions.
Greater than 83% of the lsSNPs were located in intergenic regions.
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