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Haplotypes will be inferred using a Bayesian method (PHASE).

This range can be inferred using a relatively coarse kernel resolution (large Δ r, also see Additional file 1: Figure S2).

First, if genetic drift is too weak to generate population differentiation, then dispersal cannot be inferred using a model that relies on the migration/drift balance.

Networks can be inferred using a combination of experimental and computational methods and displayed as a repertoire of connections (the cell's network repertoire), different subsets of which are selected by particular environments.

Although these observations have stimulated researchers to develop a new paradigm of HGT-driven reticulate evolution that challenges the traditional tree-based phylogeny concept [ 7- 9], it can be argued that prokaryotic phylogeny can still be inferred using a certain subset of genes ("core genes") that have mainly transferred vertically throughout evolution [ 10- 12].

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In some species, the base-pair changes could be inferred using an existing pseudogene or germline gene as a template, and therefore pseudogenes in the V loci constitute a potential donor pool for gene conversion to generate immunoglobulin diversity [85] [88].

Although FRET imaging provides invaluable evidence on the location and relative changes in second messenger concentrations in living cells, the absolute cAMP concentration must be inferred using an additional, experimental FRET calibration.

The genetic balance of these germ cells can be inferred using an in vitro embryo production technique.

Lake acidity was inferred using a diatom inference model.

Horizontally transferred genes from distantly related organisms were inferred using a Bayesian inference program with training models based on the nucleotide composition.

Thermal conductivity was inferred using a geometrical mean model from porosities estimated from LWD resistivity for two assumed grain conductivity values (k g  = 2.5W/K/m and 3.0W/K/m).

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