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As a result of its ability to interrogate anatomy deep within the body, ultrasound may provide information and yield diagnoses that would not be identified using either physical examination or sometimes even standard bedside radiologic tests.
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In six US cities, persons with acute/early HIV infection were identified using either HIV RNA testing of pooled sera from persons screened HIV antibody negative or through clinical referral of persons with acute or early infections.
At most sites, dominant growth patterns significantly different from the stand mean growth chronology were identified using either ring widths or basal area increments (BAIs).
Variants were identified using either Varscan 2.3.1 (Koboldt et al., 2009) or Samtools 0.1.8 (Li et al., 2009a).
Human claudin-low tumor samples were identified using either SigClust [ 22] or the nine-cell line claudin-low predictor.
Differentially expressed probes were identified using either a 1.5 or 2 fold cutoff for expression ratios with a limma-assigned p-value < 0.05.
As mentioned above, we worked with regulatory sites stored in Tractor_DB that were identified using either statistical models or pattern matching [ 31, 36, 37].
In addition to identifying eight of the nine known deletions, many additional putative variable regions were identified using either cutoff, with more regions being detected using the less stringent cutoff.
Slowly cycling cells have also been identified using either PKH26 labeling of mammospheres in vitro [ 23] or through an inducible histone 2b promoter linked to a GFP reporter (K5tTA-H2b-GFP) [ 24].
Transposable element-related (TE) genes were identified using either TBLASTN similarity to known repetitive elements in the TIGR Oryza Repeat Database [ 39] or the presence of repetitive element-related Pfam domains [ 40].
Lipid droplets were identified using either a 12 µg/mL Nile Red solution or by using the lipid droplet specific rabbit polyclonal LSD2-3b at 1∶500 and a goat-anti-rabbit Alexa 568 at 1∶1000 as the secondary.
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