In contrast, the 20% Col V gel has a smaller measured F/B, which would be expected for a structure comprised of smaller, more randomly distributed fibrils.
The length of a given unigene was positively correlated with the number of reads assembled into it, which is expected for a randomly fragmented transcriptome (Additional file 4).
This choice of random matrices is motivated by the observation that the distribution of in-degrees and out-degrees in C. elegans is significantly different from Poisson, which is expected for a randomly generated matrix without any correlations (Erdõs-Rényi random graph).
These simulated data sets could also be used for assessing whether several other genomic annotations were enriched in our observed dataset compared to what would be expected by randomly choosing regions matched for appropriate parameters, as discussed in subsequent subsections.
Most nucleotide changes, except for disease-associated changes, might then be expected to distribute randomly throughout a protein.
Ingenuity pathway analysis (IPA) was then used to identify genes that fell within IPA-generated pathways at a higher frequency than would normally be expected to occur for a randomly selected set of genes.
GO::TermFinder uses a list of genes as input and determines whether those genes have gene ontology (GO) terms overrepresented in their combined set of annotations compared with what would be expected by chance for a randomly selected group of genes from the background population of all of the genes [ 16].
It was also observed that there tended to be a higher success rate for species within the same Order as one of the index species as compared to species in Orders other than those of the index species, as would be expected and as previously shown for randomly designed primers [ 6].
If polyploidization had occurred, it would be expected that IQD genes are randomly distributed over the whole rice genome, as observed for the IQD gene family in Arabidopsis.
Accordingly, < RG>/< Rh> assumes a value of ca. 1.5 within this temperature regime, that is a value expected for randomly coiled Kuhn chains.
