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Threshold 9 was chosen because it is in the middle of 5 and 12, and using this threshold did not considerably affect number of genes to be excluded for downstream analyses compared to when applying threshold 5. Given that only 1 EST was sequenced for approximately 50% of the genes in our dataset (data not shown), even a very low cutoff would exclude a high number of genes from the analysis.
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Subsequently, the X and Y chromosomes were excluded for downstream data analysis.
Such clusters need to be excluded from downstream analysis.
Six trials were excluded for not irradiating the joint capsule.
Results: Two patients were excluded for incomplete data.
Women were excluded for the same reason.
This insertion was excluded for phylogenetic analysis.
Samples tested positive for genomic DNA were excluded from downstream protocols.
Therefore the day 48 soil 16S sequence data were not directly comparable to 16S sequence data generated for days 0 34 and were excluded from downstream analyses.
For these reasons, these samples have been excluded from downstream analysis.
Spots flagged as 'Not Found' by the GenePix algorithms were excluded from downstream analysis.
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