We calculated the fraction of the correlation coefficients that are equal or bigger than 0.6, as well as the fraction of the correlation coefficients that are equal or smaller than −0.6.
Currently, we have defined τ equal to 6, which means that all cases where #COMMON is equal or bigger than 6, the Similarity Index must be 1.0.
If the final score was equal or bigger than four, the tumor was considered high expression; otherwise, the tumor was considered low expression [ 21].
If the final score was equal or bigger than four, the tumor was considered high expression; otherwise, the tumor was considered low expression [ 9, 27].
A hit was considered a valid domain if its score was equal or bigger than the so-called gathering score of the model provided by the Pfam web site, and it did not overlap with any other hit of lower E-value.
In this way, defining the correction factor k: k = min τ, # COMMON), where τ = 6 The Similarity Index σ can be computed as: σ = 1 − τ − k τ This index has all the properties we are looking for: if #COMMON is 0, σ is 0; if #COMMON is equals or bigger than the threshold τ (6), σ is 1.
She joined Big Brother and the Holding Company and the band soon proved to be equal or superior to the big Bay Area acts, Jefferson Airplane and the Grateful Dead.
Given a pair of similar modules (in the sense defined above), we first check if their union has significant cluster structure: if it does not, we merge the two clusters, otherwise we systematically prefer the bigger one (if they are equal-sized, we pick the cluster with smaller score).
When it comes to playing the big boys, the Giants are equal-opportunity duds.
"No-one treats anyone else like they're small or big, everyone's equal which is really good.
