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The top predicted targets of miR-29c were found to be enriched with genes related to the cell-adhesion GO-term (Figure S4).
As obligate marine bacteria, the two RDX degraders' genomes were found to be enriched with genes for halotolerance or for Na+-driven import of essential nutrients from the environment.
Several cellular pathways were identified to be enriched with genes located within LOH regions (Table 1).
A total of eleven modules were found to be enriched with genes that displayed significantly altered expression in MRSA-252 cultures exposed to ranalexin.
Table 4 appeared to be enriched with genes involved in DNA, RNA management and protein processing while Table 5 appeared to be enriched with genes involved in cell communication, detoxification and oxidative stress management.> -wrap-foot>> -wrap-fooThoseose with bold characters correspond to those that were considered as significantly modulated as defined in the methods.
Third, the female-biased expression observed by Metta and Schlötterer is mostly found for parental genes located on the X chromosome, which is known to be enriched with genes with female-biased expression.
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Despite the fact that this pathway was discovered without using any genetic data, it was enriched with genes frequently mutated in cancer (taken from Cancer Gene Census [50], p = 1.34·10−4).
Analysis of functional enrichment in these groups shows that group 2 is enriched with genes that make up components of cytosolic ribosomes (GO 0022626, p-value = 1.61E-115).
The identified selective sweeps are enriched with genes associated with fruit sugar content, firmness, color, hormone, and secondary metabolism in both Dom_SieK and Dom_Syl contrasts, while genes related to fruit acidity were only enriched in Dom_Syl (Fig. 3 and Supplementary Data 9).
Microbes involved in both processes are potential consumers of available organic acids and fermentation products35 and we found that the LC polygons were enriched with genes involved in degradation of simpler carbohydrates (i.e., sugars) and mixed acid fermentation pathways (Supplementary Fig. 15, Supplementary Fig. 16) that could be linked to these processes.
In contrast, the wetter LC polygons were enriched with genes for anaerobic processes, such as sugar and mixed acid fermentation, iron reduction, and methanogenesis (Supplementary Fig. 11, Supplementary Fig. 16, Supplementary Fig. 18, Supplementary Fig. 20), some of which resulted in anaerobic CO2 fluxes.
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