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In this formulation, the prior knowledge can be encoded in several ways.
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The instructions for building a protein are encoded in several exons.
Standalone versions of the ImuB-C domains are encoded in several distinct conserved gene-neighborhoods.
In Corynebacterium sp. pilin subunits are encoded in several gene clusters that also contain genes for pilin-specific sortases.
The majority of members of secreted serine proteases of the Ppa family (PpaA-PpaJ) that are encoded in several different loci on the chromosome and on pCM1 could not be found in LMG 26808.
Wanderlust may be encoded in his DNA.
This family can be typified by the PFL_1302 protein from Pseudomonas fluorescens Pf-5 and is encoded in the genomes of several other Proteobacteria (Additional file 1).
We also discovered that P18 homologues are encoded in the genomes of several enteric (PaP3, Felix 01, and RB49) and marine (P-SSM4, S-PM2, and P-SSM2) tailed bacteriophages [ 39].
Several ATPases are encoded in archaeal viral genomes – both crenarchaeal and euryarchaeal – and these enzymes have been implicated in a variety of functions during the viral life cycle.
Heat shock proteins 70 kDa, 90 kDa, 110kDA, HspQ and HspX (the last two proteins being homologues of the bacterial heat shock factor sigma32 and α-crystallin, respectively) are encoded in the coral genome, together with several HSP gene transcription factors.
Thus, several proteasome chaperones and assembly chaperones are encoded in the A. digitifera genome (Table 10).
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