In addition we have summarised where there is evidence in the UMD3.1 assembly of the TRAV/TRDV gene content of copies of a homology unit differing due to either varying proportions of the homology unit being duplicated in different replicative iterations or post-replication insertion/deletion (see Additional file 8).
Similar data necessary for solving various tasks are duplicated in different databases in its own storage formats.
PCRs on the extract of the 1864 specimen were duplicated in different laboratories that are physically separated from each other as well as from the aDNA facility.
Although a logical sequence of formal planning tools was expected, in most cases planning was duplicated in different periods and documents, confirming the incoherence and redundancy.
Beside the above discussed genes, Muts like protein (in MMR), RAD21 (in NHEJ), RecQl4 and RecA (in HR) UBC1, UBE2N and MMS2 (in RAD6 pathway), CHEK1, CHEK2, CLK2A, PR19A/PUB60-1, AXR1, SMC2 and SMC3 (in other conserved DNA damage response genes) were found to be duplicated in Arabidopsis at different time during evolution (Additional file 5).
As illustrated in the lower panel in Fig. 3, such a WGD manifests itself graphically as the same SB being duplicated in two different Jr physical maps.
Chromosomal blocks that are duplicated in two different genomes but located at orthologous positions when comparing the two genomes are considered to be unique in the ancestor (i.e., CAR) and derived from a shared prespeciation duplication event.
Chromosomal blocks that are duplicated in two different genomes but located at orthologous positions when comparing the two genomes are considered as 1) unique in the ancestor (i.e., CAR), and 2) deriving from a shared prespeciation duplication event.
In both pathways, genes encoding the rate-limiting enzymes are duplicated in teleosts compared to tetrapods, with different modes of duplication being involved.
